GATK 4.2.0.0-GCCcore-10.2.0-Java-1.8
The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.Accessing GATK 4.2.0.0-GCCcore-10.2.0-Java-1.8
To load the module for GATK 4.2.0.0-GCCcore-10.2.0-Java-1.8 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load GATK/4.2.0.0-GCCcore-10.2.0-Java-1.8
BEAR Apps Version
More Information
For more information visit the GATK website.
Dependencies
This version of GATK has a direct dependency on: GCCcore/10.2.0 Java/1.8 Python/3.8.6-GCCcore-10.2.0
Other Versions
These versions of GATK are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 4.2.0.0-GCCcore-10.2.0-Java-11 | 2020b |
| 4.1.5.0-GCCcore-9.3.0-Java-11 | 2020a |
| 4.1.4.0-GCCcore-8.2.0-Java-1.8 | 2019a |
| 4.1.0.0-foss-2018b-Python-3.6.6 | 2018b |
| 3.8-0-Java-1.8 | 2018b |
Last modified on 3rd August 2021