GlimmerHMM 3.0.4c-GCC-8.3.0

GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model. Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM. It also utilizes Interpolated Markov Models for the coding and noncoding models.

Accessing GlimmerHMM 3.0.4c-GCC-8.3.0

To load the module for GlimmerHMM 3.0.4c-GCC-8.3.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load GlimmerHMM/3.0.4c-GCC-8.3.0

BEAR Apps Version

2019a

More Information

For more information visit the GlimmerHMM website.

Dependencies

This version of GlimmerHMM has a direct dependency on: GCC/8.3.0

Required By

This version of GlimmerHMM is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4

Last modified on 12th October 2020