PLINKSEQ 0.10-GCC-8.2.0-2.31.1

PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data. The specific focus is to provide a platform for analytic tool development for variation data from large-scale resequencing and genotyping projects, particularly whole-exome and whole-genome studies. It is independent of (but designed to be complementary to) the existing PLINK package.

Accessing PLINKSEQ 0.10-GCC-8.2.0-2.31.1

To load the module for PLINKSEQ 0.10-GCC-8.2.0-2.31.1 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load PLINKSEQ/0.10-GCC-8.2.0-2.31.1

BEAR Apps Version

2019a

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the PLINKSEQ website.

Dependencies

This version of PLINKSEQ has a direct dependency on: GCC/8.2.0-2.31.1 protobuf/3.7.1-GCCcore-8.2.0 zlib/1.2.11-GCCcore-8.2.0

Required By

This version of PLINKSEQ is a direct dependent of: RNA_MUTECT/1.0-foss-2019a

Last modified on 1st August 2019