BEAR Applications: SPAdes 3.15.3-GCC-11.2.0 (for BlueBEAR, BEARCloud VMs, and CaStLeS VMs)

SPAdes 3.15.3-GCC-11.2.0

Genome assembler for single-cell and isolates data sets

Accessing SPAdes 3.15.3-GCC-11.2.0

To load the module for SPAdes 3.15.3-GCC-11.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load SPAdes/3.15.3-GCC-11.2.0

BEAR Apps Version

2019a

More Information

For more information visit the SPAdes website.

Dependencies

This version of SPAdes has a direct dependency on: bzip2/1.0.8-GCCcore-11.2.0 GCC/11.2.0 libreadline/8.1-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0 zlib/1.2.11-GCCcore-11.2.0

Required By

This version of SPAdes is a direct dependent of: Unicycler/0.5.0-gompi-2021b

Other Versions

These versions of SPAdes are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
3.14.1-GCC-9.3.0-Python-3.8.2	2020a
3.14.1-GCC-8.3.0-Python-3.7.4	2019b

Last modified on 17th October 2022