SPOT-RNA 770ab5c-foss-2019a-Python-3.7.2

RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

Accessing SPOT-RNA 770ab5c-foss-2019a-Python-3.7.2

To load the module for SPOT-RNA 770ab5c-foss-2019a-Python-3.7.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load SPOT-RNA/770ab5c-foss-2019a-Python-3.7.2

There is a GPU enabled version of this module: SPOT-RNA 770ab5c-fosscuda-2019a-Python-3.7.2

BEAR Apps Version

2019a

Architectures

EL8-cascadelake — EL8-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the SPOT-RNA website.

Dependencies

This version of SPOT-RNA has a direct dependency on: foss/2019a Python/3.7.2-GCCcore-8.2.0 SciPy-bundle/2019.03-foss-2019a TensorFlow/1.14.0-foss-2019a-Python-3.7.2 tqdm/4.33.0-foss-2019a-Python-3.7.2

Other Versions

These versions of SPOT-RNA are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
770ab5c-fosscuda-2019a-Python-3.7.2 2019a

Last modified on 25th November 2020