SSAM 1.0.2-foss-2021b
Spot-based Spatial cell-type Analysis by Multidimensional mRNA density estimationAccessing SSAM 1.0.2-foss-2021b
To load the module for SSAM 1.0.2-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load SSAM/1.0.2-foss-2021b
BEAR Apps Version
Extensions
- pynndescent 0.5.8
- python-louvain-0.16
- sparse 0.14.0
- SSAM 1.0.2
- umap-learn-0.5.3
More Information
For more information visit the SSAM website.
Dependencies
This version of SSAM has a direct dependency on: Arrow/6.0.0-foss-2021b arrow-R/6.0.0.2-foss-2021b-R-4.2.0 foss/2021b IPython/7.26.0-GCCcore-11.2.0 numba/0.54.1-foss-2021b Python/3.9.6-GCCcore-11.2.0 R/4.2.0-foss-2021b scikit-image/0.19.1-foss-2021b scikit-learn/1.0.1-foss-2021b SciPy-bundle/2021.10-foss-2021b Seaborn/0.11.2-foss-2021b tqdm/4.62.3-GCCcore-11.2.0
Last modified on 28th March 2023