SSAM 1.0.2-foss-2021b

Spot-based Spatial cell-type Analysis by Multidimensional mRNA density estimation

Accessing SSAM 1.0.2-foss-2021b

To load the module for SSAM 1.0.2-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load SSAM/1.0.2-foss-2021b

BEAR Apps Version

2019a

Extensions

  • pynndescent 0.5.8
  • python-louvain-0.16
  • sparse 0.14.0
  • SSAM 1.0.2
  • umap-learn-0.5.3

More Information

For more information visit the SSAM website.

Dependencies

This version of SSAM has a direct dependency on: Arrow/6.0.0-foss-2021b arrow-R/6.0.0.2-foss-2021b-R-4.2.0 foss/2021b IPython/7.26.0-GCCcore-11.2.0 numba/0.54.1-foss-2021b Python/3.9.6-GCCcore-11.2.0 R/4.2.0-foss-2021b scikit-image/0.19.1-foss-2021b scikit-learn/1.0.1-foss-2021b SciPy-bundle/2021.10-foss-2021b Seaborn/0.11.2-foss-2021b tqdm/4.62.3-GCCcore-11.2.0

Last modified on 28th March 2023