Trinity 2.8.4-foss-2018b

There is a newer version of Trinity

Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads.

Accessing Trinity 2.8.4-foss-2018b

To load the module for Trinity 2.8.4-foss-2018b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Trinity/2.8.4-foss-2018b

BEAR Apps Version

2019a

More Information

For more information visit the Trinity website.

Dependencies

This version of Trinity has a direct dependency on: ant/1.10.5-Java-1.8 Bowtie/1.2.2-foss-2018b Bowtie2/2.3.4.2-foss-2018b foss/2018b Java/1.8 ncurses/6.1-GCCcore-7.3.0 Perl/5.28.0-GCCcore-7.3.0 zlib/1.2.11-GCCcore-7.3.0

Required By

This version of Trinity is a direct dependent of: TraCeR/0.6.0-foss-2018b-Python-3.6.6

Other Versions

These versions of Trinity are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 11th July 2019