WhatsHap 0.18-foss-2018b-Python-3.6.6

WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.

Accessing WhatsHap 0.18-foss-2018b-Python-3.6.6

To load the module for WhatsHap 0.18-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load WhatsHap/0.18-foss-2018b-Python-3.6.6

BEAR Apps Version

2019a

Extensions

  • pyfaidx 0.5.5.2
  • PyVCF 0.6.8
  • whatshap 0.18
  • xopen 0.7.3

More Information

For more information visit the WhatsHap website.

Dependencies

This version of WhatsHap has a direct dependency on: Biopython/1.72-foss-2018b-Python-3.6.6 foss/2018b networkx/2.2-foss-2018b-Python-3.6.6 Pysam/0.15.1-foss-2018b-Python-3.6.6 Python/3.6.6-foss-2018b

Other Versions

These versions of WhatsHap are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
0.18-foss-2019a-Python-3.7.2 2019a

Last modified on 25th November 2019