cell2location 0.1.3-foss-2022a
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)Accessing cell2location 0.1.3-foss-2022a
To load the module for cell2location 0.1.3-foss-2022a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load cell2location/0.1.3-foss-2022a
There is a GPU enabled version of this module: cell2location 0.1.3-foss-2022a-CUDA-11.7.0
BEAR Apps Version
Extensions
- cell2location 0.1.3
More Information
For more information visit the cell2location website.
Dependencies
This version of cell2location has a direct dependency on: foss/2022a OpenCV/4.6.0-foss-2022a-contrib Python/3.10.4-GCCcore-11.3.0 PyTorch/1.12.1-foss-2022a scanpy/1.9.1-foss-2022a SciPy-bundle/2022.05-foss-2022a scvi-tools/0.20.1-foss-2022a
Other Versions
These versions of cell2location are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 0.05-alpha-fosscuda-2020b | 2020b |
| 0.05-alpha-foss-2020b | 2020b |
| 0.1.3-foss-2022a-CUDA-11.7.0 | 2022a |
Last modified on 27th February 2023