There is a newer version of mappyThis repository also provides Python bindings to a subset of C APIs. File python/README.rst gives the full documentation; python/minimap2.py shows an example. This Python extension, mappy, is also available from PyPI
Accessing mappy 2.17-foss-2019a-Python-3.7.2
To load the module for mappy 2.17-foss-2019a-Python-3.7.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load mappy/2.17-foss-2019a-Python-3.7.2
There is a GPU enabled version of this module: mappy 2.17-fosscuda-2019a-Python-3.7.2
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the mappy website.
This version of mappy has a direct dependency on: foss/2019a Python/3.7.2-GCCcore-8.2.0
This version of mappy is a direct dependent of: tombo/1.5-foss-2019a-Python-3.7.2
These versions of mappy are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 16th August 2019