There is a newer version of minimap2
Minimap2 is a fast sequence mapping and alignment program that can find overlaps between
long noisy reads, or map long reads or their assemblies to a reference genome optionally with detailed
alignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to
~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited
test data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replace
BWA-MEM for long reads and contig alignment.
Accessing minimap2 2.24-GCCcore-11.2.0
To load the module for minimap2 2.24-GCCcore-11.2.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load minimap2/2.24-GCCcore-11.2.0
BEAR Apps Version
For more information visit the minimap2 website.
This version of minimap2 has a direct dependency on:
This version of minimap2 is a direct dependent of:
These versions of minimap2 are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Last modified on 26th July 2022