BEAR Applications

modbam2bed 0.7.0-GCC-11.2.0

There is a newer version of modbam2bed

A program to aggregate modified base counts stored in a modified-base BAM (Section 2.1) file to a bedMethyl file.

Accessing modbam2bed 0.7.0-GCC-11.2.0

To load the module for modbam2bed 0.7.0-GCC-11.2.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load modbam2bed/0.7.0-GCC-11.2.0

BEAR Apps Version

2019a

More Information

For more information visit the modbam2bed website.

Dependencies

This version of modbam2bed has a direct dependency on: bzip2/1.0.8-GCCcore-11.2.0 GCC/11.2.0 HTSlib/1.14-GCC-11.2.0 libdeflate/1.8-GCCcore-11.2.0 zlib/1.2.11-GCCcore-11.2.0

Other Versions

These versions of modbam2bed are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 1st February 2023