BEAR Applications

nanopolish 0.14.0-foss-2021b

Signal-level algorithms for MinION data

Accessing nanopolish 0.14.0-foss-2021b

To load the module for nanopolish 0.14.0-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load nanopolish/0.14.0-foss-2021b

BEAR Apps Version

2019a

More Information

For more information visit the nanopolish website.

Dependencies

This version of nanopolish has a direct dependency on: Biopython/1.79-foss-2021b foss/2021b HDF5/1.12.1-gompi-2021b HTSlib/1.14-GCC-11.2.0 minimap2/2.24-GCCcore-11.2.0 OrthoFinder/2.5.4-foss-2021b Pysam/0.18.0-GCC-11.2.0 Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b VBZ-Compression/1.0.2-gompi-2021b zlib/1.2.11-GCCcore-11.2.0

Other Versions

These versions of nanopolish are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 4th April 2023