scvi-tools 0.20.1-foss-2022a-CUDA-11.7.0
scvi-tools (single-cell variational inference tools) is a package for probabilistic modeling and analysis of single-cell omics data, built on top of PyTorch and AnnData.Accessing scvi-tools 0.20.1-foss-2022a-CUDA-11.7.0
To load the module for scvi-tools 0.20.1-foss-2022a-CUDA-11.7.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load scvi-tools/0.20.1-foss-2022a-CUDA-11.7.0
There is a CPU version of this module: scvi-tools 0.20.1-foss-2022a
BEAR Apps Version
Extensions
- cached-property-1.5.2
- chex 0.1.6
- contextlib2 21.6.0
- docrep 0.3.2
- flax 0.6.4
- ml_collections 0.1.1
- mudata 0.2.1
- multipledispatch 0.6.0
- numpyro 0.11.0
- optax 0.1.4
- orbax 0.1.2
- pyro-api-0.1.2
- pyro-ppl-1.8.4
- scvi_tools 0.20.1
- tensorstore 0.1.32
- toolz 0.12.0
More Information
For more information visit the scvi-tools website.
Dependencies
This version of scvi-tools has a direct dependency on: CUDA/11.7.0 dm-tree/0.1.8-GCCcore-11.3.0 foss/2022a h5py/3.7.0-foss-2022a IPython/8.5.0-GCCcore-11.3.0 jax/0.4.4-foss-2022a-CUDA-11.7.0 matplotlib/3.5.2-foss-2022a openpyxl/3.0.10-GCCcore-11.3.0 poetry/1.2.2-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0 PyTorch-Lightning/1.9.3-foss-2022a-CUDA-11.7.0 scanpy/1.9.1-foss-2022a scikit-learn/1.1.2-foss-2022a scikit-misc/0.1.4-foss-2022a SciPy-bundle/2022.05-foss-2022a
Required By
This version of scvi-tools is a direct dependent of: cell2location/0.1.3-foss-2022a-CUDA-11.7.0
Other Versions
These versions of scvi-tools are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Version | BEAR Apps Version |
---|---|
0.20.1-foss-2022a | 2022a |
Last modified on 28th February 2023