BEAR Applications

Bowtie 1.2.3-GCC-8.3.0

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome.

Accessing Bowtie 1.2.3-GCC-8.3.0

To load the module for Bowtie 1.2.3-GCC-8.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Bowtie/1.2.3-GCC-8.3.0

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

• BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
• BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the Bowtie website.

Dependencies

This version of Bowtie has a direct dependency on: GCC/8.3.0 tbb/2019_U9-GCCcore-8.3.0 zlib/1.2.11-GCCcore-8.3.0

Required By

This version of Bowtie is a direct dependent of: FastQ_Screen/0.14.1-foss-2019b-Perl-5.30.0

Other Versions

These versions of Bowtie are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 10th July 2020