CIRI-long 1.1.0-foss-2021b

Circular RNA Identification for Long-Reads Nanopore Sequencing Data

Accessing CIRI-long 1.1.0-foss-2021b

To load the module for CIRI-long 1.1.0-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load CIRI-long/1.1.0-foss-2021b

BEAR Apps Version

2019b

Extensions

  • bwapy 0.1.4
  • CIRI_long 1.1.0
  • mappy 2.24
  • pyccs 1.1.0

More Information

For more information visit the CIRI-long website.

Dependencies

This version of CIRI-long has a direct dependency on: Biopython/1.79-foss-2021b edlib/1.3.9-GCC-11.2.0 foss/2021b minimap2/2.24-GCCcore-11.2.0 Pysam/0.18.0-GCC-11.2.0 pyspoa/0.0.8-GCC-11.2.0 Python/3.9.6-GCCcore-11.2.0 python-Levenshtein/0.12.2-foss-2021b SAMtools/1.15.1-GCC-11.2.0 scikit-learn/1.0.1-foss-2021b SciPy-bundle/2021.10-foss-2021b

Last modified on 26th July 2022