There is a newer version of DendroPyA Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
Accessing DendroPy 4.4.0-GCCcore-8.3.0
To load the module for DendroPy 4.4.0-GCCcore-8.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load DendroPy/4.4.0-GCCcore-8.3.0
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the DendroPy website.
This version of DendroPy has a direct dependency on: GCCcore/8.3.0 Python/2.7.16-GCCcore-8.3.0 Python/3.7.4-GCCcore-8.3.0
This version of DendroPy is compatible with multiple vesions of Python. At any time, only one of the versions of Python can be active and the desired version of Python should be loaded before loading this version of DendroPy.
This version of DendroPy is a direct dependent of: SEPP/4.3.10-foss-2019b-Python-3.7.4
These versions of DendroPy are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 24th August 2022