GeneMark-ET 4.61-GCCcore-8.3.0

Eukaryotic gene prediction suite with automatic training

Accessing GeneMark-ET 4.61-GCCcore-8.3.0

To load the module for GeneMark-ET 4.61-GCCcore-8.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load GeneMark-ET/4.61-GCCcore-8.3.0

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the GeneMark-ET website.

Dependencies

This version of GeneMark-ET has a direct dependency on: GCCcore/8.3.0 Perl/5.30.0-GCCcore-8.3.0

Required By

This version of GeneMark-ET is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4

Last modified on 12th October 2020