Liftoff 1.4.2-foss-2019b-Python-3.7.4

Liftoff is a gene annotation mapping tool that maps annotations in GFF or GTF between assemblies of the same, or closely-related species.

Accessing Liftoff 1.4.2-foss-2019b-Python-3.7.4

To load the module for Liftoff 1.4.2-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load Liftoff/1.4.2-foss-2019b-Python-3.7.4

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the Liftoff website.

Dependencies

This version of Liftoff has a direct dependency on: foss/2019b minimap2/2.17-GCC-8.3.0 Python/3.7.4-GCCcore-8.3.0

Last modified on 7th September 2020