Monocle3 0.2.1-foss-2019b-R-3.6.2

There is a newer version of Monocle3

An analysis toolkit for single-cell RNA-seq.

Accessing Monocle3 0.2.1-foss-2019b-R-3.6.2

To load the module for Monocle3 0.2.1-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Monocle3/0.2.1-foss-2019b-R-3.6.2

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

Extensions

  • furrr 0.1.0
  • grr 0.9.5
  • leidenbase 0.1.0
  • Matrix.utils 0.9.8
  • Monocle3 0.2.1
  • pbmcapply 1.5.0
  • RhpcBLASctl-0.20-17
  • rsample 0.0.6
  • spdep-1.1-3
  • speedglm-0.3-2
  • uwot 0.1.8

More Information

For more information visit the Monocle3 website.

Dependencies

This version of Monocle3 has a direct dependency on: foss/2019b R/3.6.2-foss-2019b R-bundle-Bioconductor/3.10-foss-2019b-R-3.6.2 sf/0.9-0-foss-2019b-R-3.6.2

Required By

This version of Monocle3 is a direct dependent of: BEAR-R-bio/2019b-foss-2019b-R-3.6.2

Other Versions

These versions of Monocle3 are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
1.0.0-foss-2020b-R-4.0.3 2020b

Last modified on 4th May 2020