Qualimap 2.2.1-foss-2019b-R-3.6.2Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.
Accessing Qualimap 2.2.1-foss-2019b-R-3.6.2
To load the module for Qualimap 2.2.1-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load Qualimap/2.2.1-foss-2019b-R-3.6.2
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the Qualimap website.
This version of Qualimap has a direct dependency on: foss/2019b Java/11 R/3.6.2-foss-2019b R-bundle-Bioconductor/3.10-foss-2019b-R-3.6.2
Last modified on 4th February 2021