R 3.5.1-foss-2018b

There is a newer version of R

R is a free software environment for statistical computing and graphics.

Accessing R 3.5.1-foss-2018b

To load the module for R 3.5.1-foss-2018b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load R/3.5.1-foss-2018b

BEAR Apps Version

2019b

Plotting in R and X11 Errors

If you receive an error message unable to open connection to X11 display when generating plots then you should either:

  • add options(bitmapType='cairo') before plotting
  • or change the plot command to include type="cairo"

Extensions

  • abc 2.1
  • abc.data 1.0
  • abind-1.4-5
  • acepack 1.4.1
  • adabag 4.2
  • ade4-1.7-11
  • adegenet 2.1.1
  • adephylo-1.1-11
  • ADGofTest 0.3
  • aggregation 1.0.1
  • akima-0.6-2
  • AlgDesign-1.1-7.3
  • animation 2.5
  • aod 1.3
  • ape 5.1
  • arm-1.10-1
  • assertthat 0.2.0
  • AUC 0.3.0
  • audio-0.1-5.1
  • b a
  • backports 1.1.2
  • base64 2.0
  • base64enc-0.1-3
  • BatchJobs 1.7
  • BayesianTools 0.1.5
  • bayesm-3.1-0.1
  • BB-2014.10-1
  • BBmisc 1.11
  • BDgraph 2.51
  • beanplot 1.2
  • beeswarm 0.2.3
  • BH-1.66.0-1
  • BiasedUrn 1.07
  • bibtex 0.4.2
  • bibtex 0.4.2
  • bigmemory 4.5.33
  • bigmemory.sri 0.1.3
  • bindr 0.1.1
  • bindrcpp 0.2.2
  • bio3d-2.3-4
  • biom 0.3.12
  • bit-1.1-14
  • bit64-0.9-7
  • bitops-1.0-6
  • blob 1.1.1
  • bmp 0.3
  • bnlearn 4.3
  • bold 0.5.0
  • boot-1.3-20
  • bootstrap 2017.2
  • brew-1.0-6
  • brglm 0.6.1
  • bridgedist 0.1.0
  • bridgesampling-0.4-0
  • Brobdingnag-1.2-6
  • broom 0.5.0
  • bst-0.3-15
  • Cairo-1.5-9
  • calibrate 1.7.2
  • callr 2.0.4
  • car-3.0-0
  • carData-3.0-1
  • caret-6.0-80
  • caTools 1.17.1.1
  • cellranger 1.1.0
  • cgdsr 1.2.10
  • cghFLasso-0.2-1
  • checkmate 1.8.5
  • chemometrics 1.4.2
  • chron-2.3-52
  • circlize 0.4.4
  • class-7.3-14
  • classInt-0.2-3
  • cli 1.0.0
  • clipr 0.4.1
  • cluster-2.0.7-1
  • clusterGeneration 1.3.4
  • clusterRepro-0.5-1.1
  • clustree 0.2.2
  • clValid-0.6-6
  • coda-0.19-1
  • codetools-0.2-15
  • coin-1.2-2
  • colorspace-1.3-2
  • combinat-0.0-8
  • ComICS 1.0.4
  • commonmark 1.5
  • compositions-1.40-2
  • corpcor 1.6.9
  • cowplot 0.9.3
  • crayon 1.3.4
  • crosstalk 1.0.0
  • crul 0.6.0
  • csSAM 1.2.4
  • cubature 1.4
  • curl 3.2
  • cvAUC 1.1.0
  • CVST-0.2-2
  • d a
  • d3Network 0.5.2.1
  • data.table 1.11.4
  • DBI 1.0.0
  • dbplyr 1.2.2
  • ddalpha 1.3.4
  • deal-1.2-37
  • debugme 1.1.0
  • deldir-0.1-15
  • dendextend 1.8.0
  • DEoptimR-1.0-8
  • Deriv 3.8.5
  • desc 1.2.0
  • deSolve 1.21
  • devtools 1.13.6
  • DHARMa 0.2.0
  • diagram 1.6.4
  • DiagrammeR 1.0.0
  • dichromat-2.0-0
  • digest 0.6.15
  • dimRed 0.1.0
  • diptest-0.75-7
  • DiscriMiner-0.1-29
  • dismo-1.1-4
  • distillery-1.0-4
  • distr 2.7.0
  • distrEx 2.7.0
  • DistributionUtils-0.5-1
  • diveRsity 1.9.90
  • doMC 1.3.5
  • doParallel 1.0.11
  • doRNG 1.7.1
  • doSNOW 1.0.16
  • dotCall64-1.0-0
  • downloader 0.4
  • dplyr 0.7.6
  • DRR 0.0.3
  • DT 0.4
  • dtangle 0.3.1
  • DTRreg 1.3
  • dtw-1.20-1
  • dummies 1.5.6
  • dynamicTreeCut-1.63-1
  • e1071-1.7-0
  • EasyABC 1.5
  • ellipse 0.4.1
  • emulator-1.2-17
  • energy-1.7-5
  • ergm 3.9.4
  • ergm.count 3.3.0
  • evaluate 0.11
  • expm-0.999-2
  • expsmooth 2.3
  • extrafont 0.17
  • extrafontdb 1.0
  • extRemes-2.0-9
  • FactoMineR 1.41
  • fail 1.3
  • fansi 0.3.0
  • fastcluster 1.1.25
  • fastICA-1.2-1
  • fastmatch-1.1-0
  • fdrtool 1.2.15
  • feather 0.3.1
  • ff-2.2-14
  • ffbase 0.12.3
  • fftw-1.0-4
  • fields 9.6
  • filehash-2.4-1
  • fishMod 0.29
  • fitdistrplus-1.0-11
  • flashClust-1.01-2
  • flexclust-1.3-5
  • flexmix-2.3-14
  • fma 2.3
  • FME 1.3.5
  • FNN 1.1.2.1
  • forcats 0.3.0
  • foreach 1.4.4
  • forecast 8.4
  • foreign-0.8-71
  • formatR 1.5
  • Formula-1.2-3
  • fossil 0.3.7
  • fpc-2.1-11.1
  • fpp 0.5
  • fracdiff-1.4-2
  • futile.logger 1.4.3
  • futile.options 1.0.1
  • future 1.9.0
  • g r
  • g r
  • g r
  • gam 1.16
  • gamlss-5.1-2
  • gamlss.data-5.0-1
  • gamlss.dist-5.0-6
  • gamlss.tr-5.1-0
  • gap-1.1-22
  • gapfill 0.9.6
  • gbm 2.1.3
  • gbRd-0.4-11
  • gclus 1.3.1
  • gdalUtils 2.0.1.14
  • gdata 2.18.0
  • gdistance-1.2-2
  • gee-4.13-19
  • geepack-1.2-1
  • geiger 2.0.6
  • GeneNet 1.2.13
  • geometry-0.3-6
  • getopt 1.20.2
  • GetoptLong 0.1.7
  • GGally 1.4.0
  • ggbeeswarm 0.6.0
  • ggforce 0.1.3
  • ggm 2.3
  • ggplot2 3.0.0
  • ggraph 1.0.2
  • ggrepel 0.8.0
  • ggridges 0.5.0
  • ggvis 0.4.3
  • GillespieSSA-0.5-4
  • git2r 0.23.0
  • glasso 1.10
  • gllvm 1.0
  • glmmML 1.0.3
  • glmmTMB 0.2.2.0
  • glmnet-2.0-16
  • GlobalOptions 0.1.0
  • globals 0.12.1
  • glue 1.3.0
  • gmm-1.6-2
  • gmodels 2.18.1
  • goftest-1.1-1
  • gomms 1.0
  • gower 0.1.2
  • gplots 3.0.1
  • gridBase-0.4-7
  • gridExtra 2.3
  • grpreg-3.2-0
  • GSA 1.03
  • gsalib 2.1
  • gsw-1.0-5
  • gtable 0.2.0
  • gtools 3.8.1
  • haven 1.1.2
  • hdf5r 1.0.0
  • heatmap3 1.1.1
  • hexbin 1.27.2
  • highr 0.7
  • Hmisc-4.1-1
  • hms 0.4.2
  • htmlTable 1.12
  • htmltools 0.3.6
  • htmlwidgets 1.2
  • httpcode 0.2.0
  • httpuv 1.4.5
  • httr 1.3.1
  • huge 1.2.7
  • hwriter 1.3.2
  • HWxtest 1.1.7
  • ica-1.0-2
  • IDPmisc 1.1.17
  • igraph 1.2.2
  • imager 0.41.1
  • ineq-0.2-13
  • influenceR 0.1.0
  • infotheo 1.2.0
  • interpretR 0.2.4
  • inum-1.0-0
  • ipred-0.9-7
  • irace 3.1
  • irlba 2.3.2
  • Iso-0.0-17
  • iterators 1.0.10
  • JBTools 0.7.2.9
  • jomo-2.6-3
  • jpeg-0.1-8
  • jsonlite 1.5
  • kernlab-0.9-27
  • KernSmooth-2.23-15
  • klaR-0.6-14
  • knitr 1.20
  • KODAMA 1.4
  • kohonen 3.0.6
  • ks 1.11.3
  • labdsv-1.8-0
  • labeling 0.3
  • labelled 1.1.0
  • laeken 0.4.6
  • lambda.r 1.2.3
  • lars 1.2
  • later 0.7.3
  • later 0.7.4
  • lattice-0.20-35
  • latticeExtra-0.6-28
  • lava 1.6.3
  • lavaan-0.6-2
  • lazy-1.2-16
  • lazyeval 0.2.1
  • leaps 3.0
  • LearnBayes 2.15.1
  • lhs 0.16
  • libcoin-1.0-1
  • limSolve 1.5.5.3
  • listenv 0.7.0
  • lme4-1.1-18-1
  • Lmoments-1.2-3
  • lmtest-0.9-36
  • locfdr-1.1-8
  • locfit-1.5-9.1
  • logcondens 2.1.5
  • logistf 1.23
  • logspline 2.1.11
  • longitudinal 1.1.12
  • longmemo-1.0-0
  • lpSolve 5.6.13
  • lsei-1.2-0
  • lubridate 1.7.4
  • m e
  • magic-1.5-8
  • magrittr 1.5
  • manipulateWidget 0.10.0
  • maps 3.3.0
  • maptools-0.9-3
  • markdown 0.8
  • MASS-7.3-50
  • Matching-4.9-3
  • MatchIt 3.0.2
  • Matrix-1.2-14
  • matrixcalc-1.0-3
  • MatrixModels-0.4-1
  • matrixStats 0.54.0
  • maxLik-1.3-4
  • mboost-2.9-0
  • mclust 5.4.1
  • mcmc-0.9-5
  • MCMCpack-1.4-4
  • mediation 4.4.6
  • memoise 1.1.0
  • memuse-4.0-0
  • metap 1.0
  • mgcv-1.8-24
  • mi 1.0
  • mice 3.3.0
  • mime 0.5
  • miniUI 0.1.1.1
  • minpack.lm-1.2-1
  • minqa 1.2.4
  • misc3d-0.8-4
  • miscTools-0.6-22
  • mitml-0.3-6
  • mixtools 1.1.0
  • mlbench-2.1-1
  • mlogit-0.3-0
  • mlr 2.12.1
  • mnormt-1.5-5
  • ModelMetrics 1.2.0
  • modelr 0.1.2
  • modeltools-0.2-22
  • moments 0.14
  • mpath-0.3-5
  • msm 1.6.6
  • multcomp-1.4-8
  • multicool-0.1-10
  • munsell 0.5.0
  • mvabund 3.13.1
  • mvtnorm-1.0-8
  • natserv 0.1.4
  • ncbit 2013.03.29
  • network 1.13.0.1
  • networkDynamic 0.9.0
  • neuRosim-0.2-12
  • nleqslv 3.3.2
  • nlme-3.1-137
  • nloptr 1.0.4
  • NLP-0.1-11
  • NMF 0.21.0
  • NMF 0.21.0
  • nnet-7.3-12
  • nnls 1.4
  • nor1mix-1.2-3
  • np-0.60-8
  • npsurv-0.4-0
  • numDeriv-2016.8-1
  • oce-0.9-23
  • OceanView 1.0.4
  • openssl 1.0.2
  • openxlsx 4.1.0
  • optmatch-0.9-10
  • optparse 1.6.0
  • ordinal-2018.4-19
  • pan 1.6
  • parallelMap 1.3
  • ParamHelpers 1.11
  • party-1.3-1
  • partykit-1.2-2
  • pastecs 1.3.21
  • pbapply-1.3-4
  • pbivnorm 0.6.0
  • pbkrtest-0.4-7
  • pcaPP-1.9-73
  • penalized-0.9-51
  • peperr-1.1-7
  • permute-0.9-4
  • phangorn 2.4.0
  • pheatmap 1.0.10
  • phylobase 0.8.4
  • pillar 1.3.0
  • pim 2.0.1
  • pinfsc50 1.1.0
  • pixmap-0.4-11
  • pkgbuild 1.0.0
  • pkgconfig 2.0.2
  • pkgload 1.0.0
  • pkgmaker 0.27
  • plogr 0.2.0
  • plot3D 1.1.1
  • plot3Drgl 1.0.1
  • plotly 4.8.0
  • plotrix-3.7-2
  • pls-2.6-0
  • plyr 1.8.4
  • png-0.1-7
  • PoissonSeq 1.1.2
  • polspline 1.1.13
  • polyclip-1.9-1
  • polynom-1.3-9
  • prabclus-2.2-6
  • pracma 2.1.4
  • praise 1.0.0
  • prettyunits 1.0.2
  • pROC 1.12.1
  • processx 3.2.0
  • prodlim 2018.04.18
  • profileModel-0.5-9
  • progress 1.2.0
  • promises 1.0.1
  • promises 1.0.1
  • proto 1.0.0
  • proxy-0.4-22
  • pryr 0.1.4
  • ps 1.1.0
  • pscl 1.5.2
  • pspline-1.0-18
  • psych 1.8.4
  • pulsar 0.3.4
  • purrr 0.2.5
  • pvclust-2.0-0
  • qgraph 1.5
  • qrnn 2.0.3
  • quadprog-1.5-5
  • quantmod-0.4-13
  • quantreg 5.36
  • questionr 0.6.3
  • R.cache 0.13.0
  • R.matlab 3.6.1
  • R.methodsS3 1.7.1
  • R.oo 1.22.0
  • R.rsp 0.42.0
  • R.utils 2.6.0
  • R6 2.2.2
  • randomForest-4.6-14
  • randomForestSRC 2.7.0
  • ranger 0.10.1
  • RANN 2.6
  • raster-2.6-7
  • RCircos 1.2.0
  • RColorBrewer-1.1-2
  • Rcpp 0.12.18
  • RcppArmadillo 0.9.100.5.0
  • RcppEigen 0.3.3.4.0
  • RcppGSL 0.3.6
  • RcppProgress 0.4.1
  • RcppRoll 0.3.0
  • RCurl-1.95-4.11
  • Rdpack-0.9-0
  • readbitmap 0.1.5
  • readr 1.1.1
  • readxl 1.1.0
  • recipes 0.1.3
  • registry 0.5
  • rematch 1.0.1
  • rentrez 1.2.1
  • reprex 0.2.0
  • reshape 0.8.7
  • reshape2 1.4.3
  • reticulate 1.10
  • RGCCA 2.1.2
  • rgdal-1.3-4
  • rgexf 0.15.3
  • rgl 0.99.16
  • RInside 0.2.14
  • rio 0.5.10
  • ritis 0.7.2
  • RItools-0.1-16
  • rJava-0.9-10
  • rjson 0.2.20
  • RJSONIO-1.3-0
  • rlang 0.2.2
  • rlecuyer-0.3-4
  • rmarkdown 1.10
  • rmeta 3.0
  • Rmpi-0.6-7
  • rms-5.1-2
  • RMTstat 0.3
  • rncl 0.8.3
  • RNeXML 2.1.2
  • rngtools 1.3.1
  • robustbase-0.93-2
  • ROCR-1.0-7
  • Rook-1.1-1
  • rootSolve 1.7
  • rotl 3.0.4
  • roxygen2 6.1.0
  • rpart-4.1-13
  • rprojroot-1.3-2
  • rrcov-1.4-4
  • rredlist 0.5.0
  • RSNNS-0.4-11
  • RSQLite 2.1.1
  • Rssa 1.0
  • rstudioapi 0.7
  • Rtsne 0.13
  • Rttf2pt1 1.3.7
  • RUnit 0.4.32
  • rversions 1.0.3
  • rvest 0.3.2
  • RWeka-0.4-38
  • RWekajars-3.9.2-1
  • s p
  • s t
  • s t
  • sandwich-2.5-0
  • scales 1.0.0
  • scatterplot3d-0.3-41
  • SDMTools-1.1-221
  • seewave 2.1.0
  • segmented-0.5-3.0
  • selectr-0.4-1
  • sem-3.1-9
  • sendmailR-1.2-1
  • seqinr-3.4-5
  • sfsmisc-1.1-2
  • shape 1.4.4
  • shapefiles 0.7
  • shiny 1.1.0
  • shinydashboard 0.7.0
  • shinythemes 1.1.2
  • signal-0.7-6
  • SimSeq 1.4.0
  • SKAT 1.3.2.1
  • slam-0.1-43
  • sm-2.2-5.5
  • smoother 1.1
  • sn-1.5-2
  • sna 2.4
  • snow-0.4-2
  • snowfall-1.84-6.1
  • solrium 1.0.0
  • som-0.3-5.1
  • soundecology 1.3.3
  • sourcetools 0.1.7
  • sp-1.3-1
  • spam-2.2-0
  • SparseM 1.77
  • spatial-7.3-11
  • spatstat-1.56-1
  • spatstat.data-1.3-1
  • spatstat.utils-1.9-0
  • spData 0.2.9.3
  • spdep-0.7-8
  • SQUAREM-2017.10-1
  • stabledist-0.7-1
  • stabs-0.6-3
  • startupmsg 0.9.5
  • statmod 1.4.30
  • statnet 2018.10
  • statnet.common 4.1.4
  • stringi 1.2.4
  • stringr 1.3.1
  • strucchange-1.5-1
  • subplex-1.5-4
  • SuperLearner-2.0-24
  • SuppDists-1.1-9.4
  • survival-2.42-6
  • survivalROC 1.0.3
  • svd 0.4.1
  • t o
  • taxize 0.9.4
  • tclust-1.4-1
  • TeachingDemos 2.10
  • tensor 1.5
  • tensorA 0.36.1
  • tergm 3.5.2
  • testthat 2.0.0
  • TH.data-1.0-9
  • tibble 1.4.2
  • tidygraph 1.1.0
  • tidyr 0.8.1
  • tidyselect 0.2.4
  • tidyverse 1.2.1
  • tiff-0.1-5
  • timeDate 3043.102
  • timereg 1.9.2
  • tinytex 0.6
  • tkrplot-0.0-24
  • tm-0.7-5
  • TMB 1.7.14
  • tmvtnorm-1.4-10
  • TraMineR-2.0-8
  • tree-1.0-39
  • triebeard 0.3.0
  • trimcluster-0.1-2.1
  • tripack-1.3-8
  • trust-0.1-7
  • tseries-0.10-45
  • tseriesChaos-0.1-13
  • tsna 0.2.0
  • tsne-0.1-3
  • TTR-0.23-3
  • tuneR 1.3.3
  • tweedie 2.3.2
  • tweenr 0.1.5
  • u t
  • ucminf-1.1-4
  • unbalanced 2.0
  • uniqueAtomMat-0.1-3-2
  • units-0.6-1
  • urca-1.3-0
  • urltools 1.7.1
  • uroot-2.0-9
  • utf8 1.1.4
  • uuid-0.1-2
  • vcd-1.4-4
  • vcfR 1.8.0
  • vegan-2.5-2
  • VennDiagram 1.6.20
  • VGAM-1.0-5
  • VIM 4.7.0
  • vioplot 0.2
  • vipor 0.4.5
  • viridis 0.5.1
  • viridisLite 0.3.0
  • visNetwork 2.0.4
  • waveslim 1.7.5
  • webshot 0.5.0
  • whisker-0.3-2
  • WikidataR 1.4.0
  • WikipediR 1.5.0
  • wikitaxa 0.2.0
  • withr 2.1.2
  • worrms 0.2.8
  • WriteXLS 4.0.0
  • xfun 0.3
  • xlsx 0.6.1
  • xlsxjars 0.6.1
  • XML-3.98-1.15
  • xml2 1.2.0
  • xtable-1.8-2
  • xts-0.11-0
  • yaml 2.2.0
  • zip 1.0.0
  • zoo-1.8-3

More Information

For more information visit the R website.

Dependencies

This version of R has a direct dependency on: bzip2/1.0.6-GCCcore-7.3.0 cairo/1.14.12-GCCcore-7.3.0 cURL/7.60.0-GCCcore-7.3.0 FFTW/3.3.8-gompi-2018b foss/2018b GDAL/2.2.3-foss-2018b-Python-3.6.6 GMP/6.1.2-GCCcore-7.3.0 GSL/2.5-GCC-7.3.0-2.30 HDF5/1.10.2-foss-2018b ICU/61.1-GCCcore-7.3.0 Java/1.8 libGLU/9.0.0-foss-2018b libjpeg-turbo/2.0.0-GCCcore-7.3.0 libpng/1.6.34-GCCcore-7.3.0 libreadline/7.0-GCCcore-7.3.0 libsndfile/1.0.28-GCCcore-7.3.0 LibTIFF/4.0.9-GCCcore-7.3.0 libxml2/2.9.8-GCCcore-7.3.0 Mesa/18.1.1-foss-2018b ncurses/6.1-GCCcore-7.3.0 NLopt/2.4.2-GCCcore-7.3.0 PCRE/8.41-GCCcore-7.3.0 PROJ/5.0.0-foss-2018b SQLite/3.24.0-GCCcore-7.3.0 Tk/8.6.8-GCCcore-7.3.0 UDUNITS/2.2.26-foss-2018b X11/20180604-GCCcore-7.3.0 XZ/5.2.4-GCCcore-7.3.0 zlib/1.2.11-GCCcore-7.3.0

Required By

This version of R is a direct dependent of: brms/2.8.0-foss-2018b-R-3.5.1 C50/0.1.2-foss-2018b-R-3.5.1 clusterCrit/1.2.8-foss-2018b-R-3.5.1 dbscan/1.1-3-foss-2018b-R-3.5.1 DNMFilter/0.1.1-foss-2018b-R-3.5.1-Java-1.8 doFuture/0.8.0-foss-2018b-R-3.5.1 geosphere/1.5-7-foss-2018b-R-3.5.1 gfcanalysis/1.5.0-foss-2018b-R-3.5.1 ggpubr/0.2-foss-2018b-R-3.5.1 HGT-ID/1.0-foss-2018b-Java-1.8-Perl-5.28.0-R-3.5.1 IsoformSwitchAnalyzeR/1.2.0-foss-2018b-R-3.5.1 itsadug/2.3-foss-2018b-R-3.5.1 lmerTest/3.1-0-foss-2018b-R-3.5.1 lwgeom/0.1-6-foss-2018b-R-3.5.1 MAPIT/d0b348a-foss-2018b-R-3.5.1 MetaboliteDetector/3.2.20180913-foss-2018b-Linux NSM3/1.12-foss-2018b-R-3.5.1 openNLP/0.2-6-foss-2018b-R-3.5.1 PheWAS/0.12.2-2-foss-2018b-R-3.5.1 randomcoloR/1.1.0-foss-2018b-R-3.5.1 rasterVis/0.45-foss-2018b-R-3.5.1 R-bundle-Bioconductor/3.7-foss-2018b-R-3.5.1 RCIT/0.1.0-foss-2018b-R-3.5.1 rgeos/0.4-2-foss-2018b-R-3.5.1 rmweather/0.1.3-foss-2018b-R-3.5.1 rpy2/3.0.5-foss-2018b-Python-3.6.6 SciencesPo/1.4.1-foss-2018b-R-3.5.1 sjstats/0.17.4-foss-2018b-R-3.5.1 sleuth/0.30.0-foss-2018b-R-3.5.1 SnowballC/0.6.0-foss-2018b-R-3.5.1 splancs/2.01-40-foss-2018b-R-3.5.1 ssc/2.0.0-foss-2018b-R-3.5.1 svMisc/1.1.0-foss-2018b-R-3.5.1 TDA/1.6.5-foss-2018b-R-3.5.1 truncnorm/1.0-8-foss-2018b-R-3.5.1

Other Versions

These versions of R are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 3rd June 2019