RELION 3.1.1-fosscuda-2019bRELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM).
Accessing RELION 3.1.1-fosscuda-2019b
To load the module for RELION 3.1.1-fosscuda-2019b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load RELION/3.1.1-fosscuda-2019b
There is a CPU version of this module: RELION 3.1.1-foss-2019b
BEAR Apps Version
EL8-haswell (GPUs: NVIDIA P100)
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the RELION website.
This version of RELION has a direct dependency on: ctffind/4.1.14-fosscuda-2019b FLTK/1.3.5-GCC-8.3.0 fosscuda/2019b Gctf/1.06 gnuplot/5.2.8-GCCcore-8.3.0 libpng/1.6.37-GCCcore-8.3.0 LibTIFF/4.0.10-GCCcore-8.3.0 MotionCor2/1.3.2-GCCcore-8.3.0 tbb/2019_U9-GCCcore-8.3.0 tcsh/6.22.02-GCCcore-8.3.0 X11/20190717-GCCcore-8.3.0 zlib/1.2.11-GCCcore-8.3.0
These versions of RELION are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Last modified on 3rd December 2020