RNAstructure 6.2-foss-2019b-Python-3.7.4

RNAstructure is a complete package for RNA and DNA secondary structure prediction and analysis. It includes algorithms for secondary structure prediction, including facility to predict base pairing probabilities. It also can be used to predict bimolecular structures and can predict the equilibrium binding affinity of an oligonucleotide to a structured RNA target. This is useful for siRNA design. It can also predict secondary structures common to two, unaligned sequences, which is much more accurate than single sequence secondary structure prediction. Finally, RNAstructure can take a number of different types of experiment mapping data to constrain or restrain structure prediction. These include chemical mapping, enzymatic mapping, NMR, and SHAPE data.

Accessing RNAstructure 6.2-foss-2019b-Python-3.7.4

To load the module for RNAstructure 6.2-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load RNAstructure/6.2-foss-2019b-Python-3.7.4

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the RNAstructure website.

Dependencies

This version of RNAstructure has a direct dependency on: foss/2019b Java/11 Python/3.7.4-GCCcore-8.3.0

Last modified on 18th November 2020