BEAR Applications

SPOT-RNA 770ab5c-fosscuda-2019a-Python-3.7.2

RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

Accessing SPOT-RNA 770ab5c-fosscuda-2019a-Python-3.7.2

To load the module for SPOT-RNA 770ab5c-fosscuda-2019a-Python-3.7.2 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load SPOT-RNA/770ab5c-fosscuda-2019a-Python-3.7.2

There is a CPU version of this module: SPOT-RNA 770ab5c-foss-2019a-Python-3.7.2

BEAR Apps Version

2019b

More Information

For more information visit the SPOT-RNA website.

Dependencies

This version of SPOT-RNA has a direct dependency on: fosscuda/2019a Python/3.7.2-GCCcore-8.2.0 SciPy-bundle/2019.03-fosscuda-2019a TensorFlow/1.14.0-fosscuda-2019a-Python-3.7.2 tqdm/4.33.0-GCCcore-8.2.0-Python-3.7.2

Other Versions

These versions of SPOT-RNA are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 25th November 2020