Scrublet 0.2.1-foss-2019b-Python-3.7.4

Single-Cell Remover of Doublets. Python code for identifying doublets in single-cell RNA-seq data.

Accessing Scrublet 0.2.1-foss-2019b-Python-3.7.4

To load the module for Scrublet 0.2.1-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load Scrublet/0.2.1-foss-2019b-Python-3.7.4

BEAR Apps Version

2019b

Architectures

EL8-cascadelakeEL8-icelakeEL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

  • annoy 1.17.0
  • llvmlite 0.31.0
  • numba 0.48.0
  • Scrublet 0.2.1
  • umap-learn-0.4.6

More Information

For more information visit the Scrublet website.

Dependencies

This version of Scrublet has a direct dependency on: foss/2019b LLVM/8.0.1-GCCcore-8.3.0 matplotlib/3.1.1-foss-2019b-Python-3.7.4 Python/3.7.4-GCCcore-8.3.0 scikit-image/0.16.2-foss-2019b-Python-3.7.4 scikit-learn/0.21.3-foss-2019b-Python-3.7.4 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4

Last modified on 29th October 2020