Scrublet 0.2.1-foss-2019b-Python-3.7.4Single-Cell Remover of Doublets. Python code for identifying doublets in single-cell RNA-seq data.
Accessing Scrublet 0.2.1-foss-2019b-Python-3.7.4
To load the module for Scrublet 0.2.1-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load Scrublet/0.2.1-foss-2019b-Python-3.7.4
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
- annoy 1.17.0
- llvmlite 0.31.0
- numba 0.48.0
- Scrublet 0.2.1
For more information visit the Scrublet website.
This version of Scrublet has a direct dependency on: foss/2019b LLVM/8.0.1-GCCcore-8.3.0 matplotlib/3.1.1-foss-2019b-Python-3.7.4 Python/3.7.4-GCCcore-8.3.0 scikit-image/0.16.2-foss-2019b-Python-3.7.4 scikit-learn/0.21.3-foss-2019b-Python-3.7.4 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4
Last modified on 29th October 2020