Signac 1.3.0-foss-2020b-R-4.0.3

A framework for the analysis and exploration of single-cell chromatin data. The 'Signac' package contains functions for quantifying single-cell chromatin data, computing per-cell quality control metrics, dimension reduction and normalization, visualization, and DNA sequence motif analysis.

Accessing Signac 1.3.0-foss-2020b-R-4.0.3

To load the module for Signac 1.3.0-foss-2020b-R-4.0.3 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Signac/1.3.0-foss-2020b-R-4.0.3

BEAR Apps Version

2019b

Extensions

  • docopt 0.7.1
  • ggseqlogo 0.1
  • lsa 0.73.2
  • qlcMatrix 0.9.7
  • Signac 1.3.0
  • sparsesvd 0.2

More Information

For more information visit the Signac website.

Dependencies

This version of Signac has a direct dependency on: foss/2020b R/4.0.3-foss-2020b R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3 Seurat/4.0.4-foss-2020b-R-4.0.3

Other Versions

These versions of Signac are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th September 2021