SingCellaR 1.2.0-foss-2020b-R-4.0.3

Description: SingCellaR facilitates standard functionalities necessary for analysis of large and sparse 10x Genomics data, and can be applied to gene expression data sets generated by plate-base protocols such as Smart-Seq2 and TARGET-seq as well as high-throughput droplet-based platforms.

Accessing SingCellaR 1.2.0-foss-2020b-R-4.0.3

To load the module for SingCellaR 1.2.0-foss-2020b-R-4.0.3 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load SingCellaR/1.2.0-foss-2020b-R-4.0.3

BEAR Apps Version

2019b

Extensions

  • AUCell 1.12.0
  • cccd 1.5
  • crochet 2.3.0
  • LinkedMatrix 1.4.0
  • SingCellaR 1.2.0

More Information

For more information visit the SingCellaR website.

Dependencies

This version of SingCellaR has a direct dependency on: foss/2020b R/4.0.3-foss-2020b R-bundle-Bioconductor/3.12-foss-2020b-R-4.0.3

Last modified on 13th August 2021