SingleR 1.0.6-foss-2019b-R-3.6.2
A computational method for unbiased cell type recognition of scRNA-seq. SingleR leverages reference transcriptomic datasets of pure cell types to infer the cell of origin of each of the single cells independently. SingleR's annotations combined with Seurat, a processing and analysis package designed for scRNA-seq, provide a powerful tool for the investigation of scRNA-seq dataAccessing SingleR 1.0.6-foss-2019b-R-3.6.2
To load the module for SingleR 1.0.6-foss-2019b-R-3.6.2 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load SingleR/1.0.6-foss-2019b-R-3.6.2
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- ExperimentHub 1.12.0
- SingleR 1.0.6
More Information
For more information visit the SingleR website.
Dependencies
This version of SingleR has a direct dependency on: foss/2019b R/3.6.2-foss-2019b R-bundle-Bioconductor/3.10-foss-2019b-R-3.6.2
Required By
This version of SingleR is a direct dependent of: BEAR-R-bio/2019b-foss-2019b-R-3.6.2
Last modified on 22nd April 2020