SortMeRNA 4.3.6-foss-2021b

SortMeRNA is a local sequence alignment tool for filtering, mapping and clustering. The core algorithm is based on approximate seeds and allows for sensitive analysis of NGS reads. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data. SortMeRNA takes as input files of reads (fasta, fastq, fasta.gz, fastq.gz) and one or multiple rRNA database file(s), and sorts apart aligned and rejected reads into two files. SortMeRNA works with Illumina, Ion Torrent and PacBio data, and can produce SAM and BLAST-like alignments.

Accessing SortMeRNA 4.3.6-foss-2021b

To load the module for SortMeRNA 4.3.6-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load SortMeRNA/4.3.6-foss-2021b

BEAR Apps Version

2019b

More Information

For more information visit the SortMeRNA website.

Dependencies

This version of SortMeRNA has a direct dependency on: ConcurrentQueue/1.0.3-GCCcore-11.2.0 foss/2021b RapidJSON/1.1.0-GCCcore-11.2.0 RocksDB/7.9.2-GCCcore-11.2.0 zlib/1.2.11-GCCcore-11.2.0

Last modified on 16th February 2023