Topaz 0.2.4-foss-2020b-PyTorch-1.7.1

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

Accessing Topaz 0.2.4-foss-2020b-PyTorch-1.7.1

To load the module for Topaz 0.2.4-foss-2020b-PyTorch-1.7.1 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load Topaz/0.2.4-foss-2020b-PyTorch-1.7.1

BEAR Apps Version

2019b

More Information

For more information visit the Topaz website.

Dependencies

This version of Topaz has a direct dependency on: foss/2020b Python/3.8.6-GCCcore-10.2.0 PyTorch/1.7.1-foss-2020b scikit-learn/0.23.2-foss-2020b torchvision/0.8.2-foss-2020b-PyTorch-1.7.1

Last modified on 13th July 2021