TransDecoder 5.5.0-foss-2019b-Perl-5.30.0

TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.

Accessing TransDecoder 5.5.0-foss-2019b-Perl-5.30.0

To load the module for TransDecoder 5.5.0-foss-2019b-Perl-5.30.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load TransDecoder/5.5.0-foss-2019b-Perl-5.30.0

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the TransDecoder website.

Dependencies

This version of TransDecoder has a direct dependency on: CD-HIT/4.8.1-GCC-8.3.0 foss/2019b Perl/5.30.0-GCCcore-8.3.0

Last modified on 24th August 2022