Trim_Galore 0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4

Trim Galore is a wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data.

Accessing Trim_Galore 0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4

To load the module for Trim_Galore 0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Trim_Galore/0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the Trim_Galore website.

Dependencies

This version of Trim_Galore has a direct dependency on: cutadapt/2.7-GCCcore-8.3.0-Python-3.7.4 FastQC/0.11.9-Java-11 GCCcore/8.3.0 Java/11 Perl/5.30.0-GCCcore-8.3.0 pigz/2.4-GCCcore-8.3.0 Python/3.7.4-GCCcore-8.3.0

Last modified on 17th June 2020