BEAR Applications

WhatsHap 0.18-foss-2019a-Python-3.7.2

There is a newer version of WhatsHap

WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.

Accessing WhatsHap 0.18-foss-2019a-Python-3.7.2

To load the module for WhatsHap 0.18-foss-2019a-Python-3.7.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load WhatsHap/0.18-foss-2019a-Python-3.7.2

BEAR Apps Version

2019b

Extensions

• pyfaidx 0.5.5.2
• PyVCF 0.6.8
• WhatsHap 0.18
• xopen 0.7.3

More Information

For more information visit the WhatsHap website.

Dependencies

This version of WhatsHap has a direct dependency on: Biopython/1.73-foss-2019a foss/2019a networkx/2.3-foss-2019a-Python-3.7.2 Pysam/0.15.2-foss-2019a Python/3.7.2-GCCcore-8.2.0

Other Versions

These versions of WhatsHap are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 22nd July 2019