cell2location 0.1.3-foss-2022a-CUDA-11.7.0

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

Accessing cell2location 0.1.3-foss-2022a-CUDA-11.7.0

To load the module for cell2location 0.1.3-foss-2022a-CUDA-11.7.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load cell2location/0.1.3-foss-2022a-CUDA-11.7.0

There is a CPU version of this module: cell2location 0.1.3-foss-2022a

BEAR Apps Version

2019b

Extensions

  • cell2location 0.1.3

More Information

For more information visit the cell2location website.

Dependencies

This version of cell2location has a direct dependency on: CUDA/11.7.0 foss/2022a OpenCV/4.6.0-foss-2022a-CUDA-11.7.0-contrib Python/3.10.4-GCCcore-11.3.0 PyTorch/1.12.1-foss-2022a-CUDA-11.7.0 scanpy/1.9.1-foss-2022a SciPy-bundle/2022.05-foss-2022a scvi-tools/0.20.1-foss-2022a-CUDA-11.7.0

Other Versions

These versions of cell2location are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 28th February 2023