cellassign 520de59-foss-2019b-Python-3.7.4-R-3.6.2

Automated, probabilistic assignment of cell types in scRNA-seq data

Accessing cellassign 520de59-foss-2019b-Python-3.7.4-R-3.6.2

To load the module for cellassign 520de59-foss-2019b-Python-3.7.4-R-3.6.2 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load cellassign/520de59-foss-2019b-Python-3.7.4-R-3.6.2

BEAR Apps Version

2019b

Architectures

EL8-cascadelakeEL8-icelakeEL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

  • cellassign 520de59
  • tfprobability 0.8.0.0

More Information

For more information visit the cellassign website.

Dependencies

This version of cellassign has a direct dependency on: foss/2019b Python/3.7.4-GCCcore-8.3.0 R/3.6.2-foss-2019b R-bundle-Bioconductor/3.10-foss-2019b-R-3.6.2 R-keras/2.2.5.0-foss-2019b-Python-3.7.4-R-3.6.2 tensorflow_probability/0.8.0-foss-2019b-Python-3.7.4

Required By

This version of cellassign is a direct dependent of: BEAR-R-bio/2019b-foss-2019b-R-3.6.2

Last modified on 13th January 2020