gtex-pipeline gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2GTEx & TOPMed data production and analysis pipelines.
Accessing gtex-pipeline gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2
To load the module for gtex-pipeline gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load gtex-pipeline/gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the gtex-pipeline website.
This version of gtex-pipeline has a direct dependency on: FastQTL/2.184_gtex-47180b9-foss-2019b-Python-3.7.4-R-3.6.2 foss/2019b picard/2.21.1-Java-11 Python/3.7.4-GCCcore-8.3.0 R/3.6.2-foss-2019b RNA-SeQC/1.1.8-foss-2019b-Java-11 RSEM/1.3.2-foss-2019b STAR/2.7.2b-GCC-8.3.0
Last modified on 17th June 2020