panaroo 1.3.2-foss-2021b
A pangenome analysis pipeline.Accessing panaroo 1.3.2-foss-2021b
To load the module for panaroo 1.3.2-foss-2021b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load panaroo/1.3.2-foss-2021b
BEAR Apps Version
Extensions
- argcomplete 2.0.0
- argh 0.27.2
- biocode 0.10.0
- gffutils 0.11.1
- intbitset 3.0.2
- panaroo 1.3.2
- peewee 3.15.4
- taxadb 0.12.1
More Information
For more information visit the panaroo website.
Dependencies
This version of panaroo has a direct dependency on: Biopython/1.79-foss-2021b CD-HIT/4.8.1-GCC-11.2.0 DendroPy/4.5.2-GCCcore-11.2.0 edlib/1.3.9-GCC-11.2.0 foss/2021b matplotlib/3.4.3-foss-2021b networkx/2.6.3-foss-2021b plotly.py/5.4.0-GCCcore-11.2.0 PRANK/170427-GCC-11.2.0 prokka/1.14.5-gompi-2021b pyfaidx/0.7.0-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0 python-igraph/0.9.8-foss-2021b scikit-learn/1.0.1-foss-2021b SciPy-bundle/2021.10-foss-2021b tqdm/4.62.3-GCCcore-11.2.0
Last modified on 10th February 2023