pycoQC 2.5.0.21-foss-2019b-Python-3.7.4

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy).

Accessing pycoQC 2.5.0.21-foss-2019b-Python-3.7.4

To load the module for pycoQC 2.5.0.21-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load pycoQC/2.5.0.21-foss-2019b-Python-3.7.4

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• pycoQC 2.5.0.21

More Information

For more information visit the pycoQC website.

Dependencies

This version of pycoQC has a direct dependency on: foss/2019b h5py/2.10.0-foss-2019b-Python-3.7.4 plotly.py/4.5.3-foss-2019b Pysam/0.15.3-GCC-8.3.0 Python/3.7.4-GCCcore-8.3.0 SciPy-bundle/2019.10-foss-2019b-Python-3.7.4 tqdm/4.41.1-GCCcore-8.3.0

Last modified on 6th July 2020