BEAR Applications

seqtk 1.3-GCC-8.3.0

There is a newer version of seqtk

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip.

Accessing seqtk 1.3-GCC-8.3.0

To load the module for seqtk 1.3-GCC-8.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load seqtk/1.3-GCC-8.3.0

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

• BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
• BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the seqtk website.

Dependencies

This version of seqtk has a direct dependency on: GCC/8.3.0 zlib/1.2.11-GCCcore-8.3.0

Required By

This version of seqtk is a direct dependent of: shovill/1.1.0-foss-2019b-Python-3.7.4 snippy/4.6.0-foss-2019b-Perl-5.30.0

Other Versions

These versions of seqtk are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 10th November 2020