There is a newer version of sequenzaTools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.
Accessing sequenza 3.0.0-foss-2020a-R-4.0.0
To load the module for sequenza 3.0.0-foss-2020a-R-4.0.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load sequenza/3.0.0-foss-2020a-R-4.0.0
BEAR Apps Version
- copynumber 1.28.0
- seqminer 8.0
- sequenza 3.0.0
- squash 1.0.9
For more information visit the sequenza website.
This version of sequenza has a direct dependency on: foss/2020a Pandoc/2.10 R/4.0.0-foss-2020a R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0
This version of sequenza is a direct dependent of: sequenza-utils/3.0.0-foss-2020a-Python-3.8.2-R-4.0.0
These versions of sequenza are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 2nd June 2021