There is a newer version of tomboTombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
Accessing tombo 1.5.1-foss-2019b-Python-3.7.4
To load the module for tombo 1.5.1-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load tombo/1.5.1-foss-2019b-Python-3.7.4
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the tombo website.
This version of tombo has a direct dependency on: foss/2019b h5py/2.10.0-foss-2019b-Python-3.7.4 mappy/2.17-foss-2019b-Python-3.7.4 Python/3.7.4-GCCcore-8.3.0 rpy2/3.2.6-foss-2019b-Python-3.7.4 tqdm/4.41.1-GCCcore-8.3.0
These versions of tombo are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 14th May 2020