vcf2maf 1.6.18-foss-2019b-Perl-5.30.0Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms.
Accessing vcf2maf 1.6.18-foss-2019b-Perl-5.30.0
To load the module for vcf2maf 1.6.18-foss-2019b-Perl-5.30.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load vcf2maf/1.6.18-foss-2019b-Perl-5.30.0
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the vcf2maf website.
This version of vcf2maf has a direct dependency on: foss/2019b Perl/5.30.0-GCCcore-8.3.0 SAMtools/1.10-GCC-8.3.0 VEP/99.2-foss-2019b-Perl-5.30.0
Last modified on 5th October 2020