Unsupported: Use of this version of BEDTools is not supported. More information on our Applications Support and Retention Policy.
There is a newer version of BEDToolsThe BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.
Accessing BEDTools 2.29.2-GCC-8.3.0
To load the module for BEDTools 2.29.2-GCC-8.3.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load bear-apps-unsupported/handbuilt/2019
module load BEDTools/2.29.2-GCC-8.3.0
BEAR Apps Version
For more information visit the BEDTools website.
This version of BEDTools has a direct dependency on: BamTools/2.5.1-GCC-8.3.0 bzip2/1.0.8-GCCcore-8.3.0 GCC/8.3.0 XZ/5.2.4-GCCcore-8.3.0 zlib/1.2.11-GCCcore-8.3.0
This version of BEDTools is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4 pybedtools/0.8.1-foss-2019b
These versions of BEDTools are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
|Version||BEAR Apps Version|
Last modified on 23rd September 2020