BiobankRead-Bash 3.1.1-20190507-foss-2022a

Unsupported: Use of this version of BiobankRead-Bash is not supported. More information on our Applications Support and Retention Policy.

BiobankRead-Bash is a package that pulls out data from UKBiobank files and turns it into readily usable data-frames for any specified variables, with the option of filtering based on user-specified conditions. It provides faster and easier pre-processing tools in Python of UKBiobank clinical and phenotypical data, which is otherwise known for its intricate complexity.

Accessing BiobankRead-Bash 3.1.1-20190507-foss-2022a

To load the module for BiobankRead-Bash 3.1.1-20190507-foss-2022a please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load BiobankRead-Bash/3.1.1-20190507-foss-2022a

BEAR Apps Version

2019h

Extensions

  • BiobankRead-Bash-3.1.1-20190507

More Information

For more information visit the BiobankRead-Bash website.

Dependencies

This version of BiobankRead-Bash has a direct dependency on: BeautifulSoup/4.10.0-GCCcore-11.3.0 foss/2022a Python/3.10.4-GCCcore-11.3.0 SciPy-bundle/2022.05-foss-2022a Seaborn/0.12.1-foss-2022a

Last modified on 17th October 2023