Bismark 0.22.3-foss-2019b

Unsupported: Use of this version of Bismark is not supported. More information on our Applications Support and Retention Policy.

There is a newer version of Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

Accessing Bismark 0.22.3-foss-2019b

To load the module for Bismark 0.22.3-foss-2019b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load Bismark/0.22.3-foss-2019b

BEAR Apps Version

2019h

More Information

For more information visit the Bismark website.

Dependencies

This version of Bismark has a direct dependency on: Bowtie2/2.3.5.1-GCC-8.3.0 foss/2019b Perl/5.30.0-GCCcore-8.3.0 SAMtools/1.10-GCC-8.3.0

Required By

This version of Bismark is a direct dependent of: FastQ_Screen/0.14.1-foss-2019b-Perl-5.30.0

Other Versions

These versions of Bismark are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
0.24.2-foss-2021b 2021b

Last modified on 17th June 2020