Cellpose 2.2-foss-2022a-CUDA-11.7.0

Unsupported: Use of this version of Cellpose is not supported. More information on our Applications Support and Retention Policy.

a generalist algorithm for cellular segmentation

Accessing Cellpose 2.2-foss-2022a-CUDA-11.7.0

To load the module for Cellpose 2.2-foss-2022a-CUDA-11.7.0 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load Cellpose/2.2-foss-2022a-CUDA-11.7.0

There is a CPU version of this module: Cellpose 2.2-foss-2022a

BEAR Apps Version

2019h

Extensions

  • Cellpose 2.2
  • fastremap 1.13.4
  • imagecodecs 2023.1.23
  • natsort 8.2.0
  • pyqtgraph 0.13.1
  • superqt 0.4.0
  • tifffile 2023.2.3

More Information

For more information visit the Cellpose website.

Dependencies

This version of Cellpose has a direct dependency on: CUDA/11.7.0 foss/2022a numba/0.56.4-foss-2022a OpenCV/4.6.0-foss-2022a-CUDA-11.7.0-contrib PyQt5/5.15.5-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0 PyTorch/1.12.1-foss-2022a-CUDA-11.7.0 QtPy/2.3.0-GCCcore-11.3.0 tqdm/4.64.0-GCCcore-11.3.0

Other Versions

These versions of Cellpose are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 15th February 2023