Centrifuge 1.0.4-beta-gompi-2019b

Unsupported: Use of this version of Centrifuge is not supported. More information on our Applications Support and Retention Policy.

There is a newer version of Centrifuge

Centrifuge is a novel microbial classification engine that enables rapid, accurate and sensitive labeling of reads and quantification of species on desktop computers. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (4.7 GB for all complete bacterial and viral genomes plus the human genome) and classifies sequences at very high speed, allowing it to process the millions of reads from a typical high-throughput DNA sequencing run within a few minutes. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.

Accessing Centrifuge 1.0.4-beta-gompi-2019b

To load the module for Centrifuge 1.0.4-beta-gompi-2019b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load Centrifuge/1.0.4-beta-gompi-2019b

BEAR Apps Version

2019h

More Information

For more information visit the Centrifuge website.

Dependencies

This version of Centrifuge has a direct dependency on: gompi/2019b ncbi-vdb/2.10.4-gompi-2019b NGS/2.10.4-GCCcore-8.3.0-Java-11

Other Versions

These versions of Centrifuge are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
1.0.4-gompi-2020b 2020b

Last modified on 30th July 2020