BEAR Applications

DECODE 20220120-fosscuda-2020b

Unsupported: Use of this version of DECODE is not supported. More information on our Applications Support and Retention Policy.

There is a newer version of DECODE

DECODE is a Python and Pytorch based deep learning tool for single molecule localization microscopy (SMLM).

Accessing DECODE 20220120-fosscuda-2020b

To load the module for DECODE 20220120-fosscuda-2020b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load DECODE/20220120-fosscuda-2020b

BEAR Apps Version

2019h

Extensions

• DECODE 20220120
• Deprecated 1.2.13
• importlib_resources 5.4.0
• seaborn 0.10.0
• Spline 0.10.0

More Information

For more information visit the DECODE website.

Dependencies

This version of DECODE has a direct dependency on: fosscuda/2020b GitPython/3.1.14-GCCcore-10.2.0 h5py/3.1.0-fosscuda-2020b matplotlib/3.3.3-fosscuda-2020b pybind11/2.6.0-GCCcore-10.2.0 Python/3.8.6-GCCcore-10.2.0 PyTorch/1.7.1-fosscuda-2020b scikit-image/0.18.1-fosscuda-2020b scikit-learn/0.23.2-fosscuda-2020b SciPy-bundle/2020.11-fosscuda-2020b TensorFlow/2.4.1-fosscuda-2020b tqdm/4.56.2-GCCcore-10.2.0

Other Versions

These versions of DECODE are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 21st March 2022