DROP 1.0.3-foss-2020a-Python-3.8.2-R-4.0.0

Unsupported: Use of this version of DROP is not supported. More information on our Applications Support and Retention Policy.

DROP (Detection of RNA Outliers Pipeline) is intended to help researchers use RNA-Seq data in order to detect genes with aberrant expression, aberrant splicing and mono-allelic expression. It consists of three independent modules for each of those strategies.

Accessing DROP 1.0.3-foss-2020a-Python-3.8.2-R-4.0.0

To load the module for DROP 1.0.3-foss-2020a-Python-3.8.2-R-4.0.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load bear-apps-unsupported/handbuilt/2019
module load DROP/1.0.3-foss-2020a-Python-3.8.2-R-4.0.0

BEAR Apps Version

2019h

Extensions

  • click-log-0.3.2
  • drop 1.0.3
  • egg 0.4.5
  • extraDistr 1.9.1
  • FRASER 1.2.1
  • heatmaply 1.2.1
  • OUTRIDER 1.7.1
  • qap-0.1-1
  • seriation-1.2-9
  • tMAE 1.0.0
  • TSP-1.1-10
  • wbuild 1.8.0

More Information

For more information visit the DROP website.

Dependencies

This version of DROP has a direct dependency on: BCFtools/1.10.2-GCC-9.3.0 foss/2020a GATK/4.1.5.0-GCCcore-9.3.0-Java-11 Graphviz/2.44.1-foss-2020a HTSlib/1.10.2-GCC-9.3.0 Pandoc/2.10 PRROC/1.3.1-foss-2020a-R-4.0.0 Python/3.8.2-GCCcore-9.3.0 PyYAML/5.3-GCCcore-9.3.0 R/4.0.0-foss-2020a R-bundle-Bioconductor/3.11-foss-2020a-R-4.0.0 SAMtools/1.10-GCC-9.3.0 SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 snakemake/5.31.1-foss-2020a-Python-3.8.2 wget/1.20.3-GCCcore-9.3.0

Last modified on 18th March 2021